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 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

// Software Guide : BeginLatex
//
// This example illustrates how to import data into the \doxygen{Image}
// class. This is particularly useful for interfacing with other software
// systems. Many systems use a contiguous block of memory as a buffer
// for image pixel data. The current example assumes this is the case and
// feeds the buffer into an \doxygen{ImportImageFilter}, thereby producing an
// image as output.
//
// Here we create a synthetic image with a centered sphere in
// a locally allocated buffer and pass this block of memory to the
// \code{ImportImageFilter}. This example is set up so that on execution, the
// user must provide the name of an output file as a command-line argument.
//
// \index{itk::ImportImageFilter!Instantiation}
// \index{itk::ImportImageFilter!Header}
//
// First, the header file of the \doxygen{ImportImageFilter} class must be
// included.
//
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
#include "itkImage.h"
#include "itkImportImageFilter.h"
// Software Guide : EndCodeSnippet

#include "itkImageFileWriter.h"

int
main(int argc, char * argv[])
{
  if (argc < 2)
  {
    std::cerr << "Usage: " << std::endl;
    std::cerr << argv[0] << "  outputImageFile" << std::endl;
    return EXIT_FAILURE;
  }

  // Software Guide : BeginLatex
  //
  // Next, we select the data type used to represent the image pixels. We
  // assume that the external block of memory uses the same data type to
  // represent the pixels.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using PixelType = unsigned char;
  constexpr unsigned int Dimension = 3;

  using ImageType = itk::Image<PixelType, Dimension>;
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // The type of the \code{ImportImageFilter} is instantiated in the
  // following line.
  //
  // \index{itk::ImportImageFilter!Instantiation}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using ImportFilterType = itk::ImportImageFilter<PixelType, Dimension>;
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // A filter object created using the \code{New()} method is then
  // assigned to a \code{SmartPointer}.
  //
  // \index{itk::ImportImageFilter!Pointer}
  // \index{itk::ImportImageFilter!New()}
  //
  // Software Guide : EndLatex
  //
  // Software Guide : BeginCodeSnippet
  ImportFilterType::Pointer importFilter = ImportFilterType::New();
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // This filter requires the user to specify the size of the image to be
  // produced as output.  The \code{SetRegion()} method is used to this end.
  // The image size should exactly match the number of pixels available in the
  // locally allocated buffer.
  //
  // \index{itk::ImportImageFilter!SetRegion()}
  // \index{itk::ImportImageFilter!New()}
  // \index{itk::ImportImageFilter!New()}
  //
  // Software Guide : EndLatex
  //
  // Software Guide : BeginCodeSnippet
  ImportFilterType::SizeType size;

  size[0] = 200; // size along X
  size[1] = 200; // size along Y
  size[2] = 200; // size along Z

  ImportFilterType::IndexType start;
  start.Fill(0);

  ImportFilterType::RegionType region;
  region.SetIndex(start);
  region.SetSize(size);

  importFilter->SetRegion(region);
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // The origin of the output image is specified with the \code{SetOrigin()}
  // method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  const itk::SpacePrecisionType origin[Dimension] = { 0.0, 0.0, 0.0 };
  importFilter->SetOrigin(origin);
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // The spacing of the image is passed with the \code{SetSpacing()} method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  // spacing isotropic volumes to 1.0
  const itk::SpacePrecisionType spacing[Dimension] = { 1.0, 1.0, 1.0 };
  importFilter->SetSpacing(spacing);
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // Next we allocate the memory block containing the pixel data to be
  // passed to the \code{ImportImageFilter}. Note that we use exactly the
  // same size that was specified with the \code{SetRegion()} method. In a
  // practical application, you may get this buffer from some other library
  // using a different data structure to represent the images.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  const unsigned int numberOfPixels = size[0] * size[1] * size[2];
  auto *             localBuffer = new PixelType[numberOfPixels];
  // Software Guide : EndCodeSnippet

  constexpr double radius = 80.0;

  // Software Guide : BeginLatex
  //
  // Here we fill up the buffer with a binary sphere. We use simple
  // \code{for()} loops here, similar to those found in the C or FORTRAN
  // programming languages. Note that ITK
  // does not use \code{for()} loops in its internal code to access
  // pixels. All pixel access tasks are instead performed using an
  // \doxygen{ImageIterator} that supports the management of
  // n-dimensional images.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  constexpr double radius2 = radius * radius;
  PixelType *      it = localBuffer;

  for (unsigned int z = 0; z < size[2]; z++)
  {
    const double dz =
      static_cast<double>(z) - static_cast<double>(size[2]) / 2.0;
    for (unsigned int y = 0; y < size[1]; y++)
    {
      const double dy =
        static_cast<double>(y) - static_cast<double>(size[1]) / 2.0;
      for (unsigned int x = 0; x < size[0]; x++)
      {
        const double dx =
          static_cast<double>(x) - static_cast<double>(size[0]) / 2.0;
        const double d2 = dx * dx + dy * dy + dz * dz;
        *it++ = (d2 < radius2) ? 255 : 0;
      }
    }
  }
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // The buffer is passed to the \code{ImportImageFilter} with the
  // \code{SetImportPointer()} method. Note that the last argument of this
  // method specifies who will be responsible for deleting the memory block
  // once it is no longer in use. A \code{false} value indicates that the
  // \code{ImportImageFilter} will not try to delete the buffer when its
  // destructor is called. A \code{true} value, on the other hand, will allow
  // the filter to delete the memory block upon destruction of the import
  // filter.
  //
  // For the \code{ImportImageFilter} to appropriately delete the
  // memory block, the memory must be allocated with the C++
  // \code{new()} operator. Memory allocated with other memory
  // allocation mechanisms, such as C \code{malloc} or \code{calloc}, will not
  // be deleted properly by the \code{ImportImageFilter}. In
  // other words, it is the application programmer's responsibility
  // to ensure that \code{ImportImageFilter} is only given
  // permission to delete the C++ \code{new} operator-allocated memory.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  const bool importImageFilterWillOwnTheBuffer = true;
  importFilter->SetImportPointer(
    localBuffer, numberOfPixels, importImageFilterWillOwnTheBuffer);
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // Finally, we can connect the output of this filter to a pipeline.
  // For simplicity we just use a writer here, but it could be any other
  // filter.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using WriterType = itk::ImageFileWriter<ImageType>;
  WriterType::Pointer writer = WriterType::New();

  writer->SetFileName(argv[1]);
  writer->SetInput(importFilter->GetOutput());
  // Software Guide : EndCodeSnippet

  try
  {
    writer->Update();
  }
  catch (const itk::ExceptionObject & exp)
  {
    std::cerr << "Exception caught !" << std::endl;
    std::cerr << exp << std::endl;
    return EXIT_FAILURE;
  }

  // Software Guide : BeginLatex
  //
  // Note that we do not call \code{delete} on the buffer since we pass
  // \code{true} as the last argument of \code{SetImportPointer()}. Now the
  // buffer is owned by the \code{ImportImageFilter}.
  //
  // Software Guide : EndLatex

  return EXIT_SUCCESS;
}