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 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

// Software Guide : BeginLatex
//
// By now, you are probably thinking that the statistics framework in ITK is
// too complex for simply computing histograms from images. Here we illustrate
// that the benefit for this complexity is the power that these methods
// provide for dealing with more complex and realistic uses of image
// statistics than the trivial 256-bin histogram of 8-bit images that most
// software packages provide. One of such cases is the computation of
// histograms from multi-component images such as Vector images and color
// images.
//
// This example shows how to compute the histogram of an RGB image by using
// the helper class \code{ImageToHistogramFilter}.  In this first example we
// compute the histogram of each channel independently.
//
// We start by including the header of the
// \subdoxygen{Statistics}{ImageToHistogramFilter}, as well as the headers
// for the image class and the RGBPixel class.
//
// \index{itk::Statistics::ImageToHistogramFilter!header}
//
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
#include "itkImageToHistogramFilter.h"
#include "itkImage.h"
#include "itkRGBPixel.h"
// Software Guide : EndCodeSnippet


#include "itkImageFileReader.h"

int
main(int argc, char * argv[])
{

  if (argc < 2)
  {
    std::cerr << "Missing command line arguments" << std::endl;
    std::cerr << "Usage :  ImageHistogram3  inputRGBImageFileName "
              << std::endl;
    return EXIT_FAILURE;
  }


  // Software Guide : BeginLatex
  //
  // The type of the RGB image is defined by first instantiating a RGBPixel
  // and then using the image dimension specification.
  //
  // \index{itk::Statistics!Color Images}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using PixelComponentType = unsigned char;

  using RGBPixelType = itk::RGBPixel<PixelComponentType>;

  constexpr unsigned int Dimension = 2;

  using RGBImageType = itk::Image<RGBPixelType, Dimension>;
  // Software Guide : EndCodeSnippet


  using ReaderType = itk::ImageFileReader<RGBImageType>;

  ReaderType::Pointer reader = ReaderType::New();

  reader->SetFileName(argv[1]);

  try
  {
    reader->Update();
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "Problem encoutered while reading image file : " << argv[1]
              << std::endl;
    std::cerr << excp << std::endl;
    return EXIT_FAILURE;
  }


  // Software Guide : BeginLatex
  //
  // Using the RGB image type we can instantiate the type of the corresponding
  // histogram filter and construct one filter by invoking its \code{New()}
  // method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using HistogramFilterType =
    itk::Statistics::ImageToHistogramFilter<RGBImageType>;

  HistogramFilterType::Pointer histogramFilter = HistogramFilterType::New();
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // The parameters of the histogram must be defined now. Probably the most
  // important one is the arrangement of histogram bins. This is provided to
  // the histogram through a size array. The type of the array can be taken
  // from the traits of the \code{HistogramFilterType} type. We create one
  // instance of the size object and fill in its content. In this particular
  // case, the three components of the size array will correspond to the
  // number of bins used for each one of the RGB components in the color
  // image. The following lines show how to define a histogram on the red
  // component of the image while disregarding the green and blue components.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using SizeType = HistogramFilterType::HistogramSizeType;

  SizeType size(3);

  size[0] = 255; // number of bins for the Red   channel
  size[1] = 1;   // number of bins for the Green channel
  size[2] = 1;   // number of bins for the Blue  channel

  histogramFilter->SetHistogramSize(size);
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // The marginal scale must be defined in the filter. This will determine the
  // precision in the assignment of values to the histogram bins.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  histogramFilter->SetMarginalScale(10.0);
  // Software Guide : EndCodeSnippet

  // Software Guide : BeginLatex
  //
  // Finally, we must specify the upper and lower bounds for the histogram.
  // This can either be done manually using the
  // \code{SetHistogramBinMinimum()} and \code{SetHistogramBinMaximum()}
  // methods or it can be done automatically by calling
  // \code{SetHistogramAutoMinimumMaximum( true )}. Here we use the manual
  // method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  HistogramFilterType::HistogramMeasurementVectorType lowerBound(3);
  HistogramFilterType::HistogramMeasurementVectorType upperBound(3);

  lowerBound[0] = 0;
  lowerBound[1] = 0;
  lowerBound[2] = 0;
  upperBound[0] = 256;
  upperBound[1] = 256;
  upperBound[2] = 256;

  histogramFilter->SetHistogramBinMinimum(lowerBound);
  histogramFilter->SetHistogramBinMaximum(upperBound);
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // The input of the filter is taken from an image reader, and the
  // computation of the histogram is triggered by invoking the \code{Update()}
  // method of the filter.
  //
  // \index{itk::Statistics::ImageToHistogramFilter!Update()}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  histogramFilter->SetInput(reader->GetOutput());

  histogramFilter->Update();
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // We can now access the results of the histogram computation by declaring a
  // pointer to histogram and getting its value from the filter using the
  // \code{GetOutput()} method. Note that here we use a \code{const
  // HistogramType} pointer instead of a const smart pointer because we are
  // sure that the filter is not going to be destroyed while we access the
  // values of the histogram. Depending on what you are doing, it may be safer
  // to assign the histogram to a const smart pointer as shown in previous
  // examples.
  //
  // \index{itk::Statistics::ImageTohistogramFilter!GetOutput()}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  using HistogramType = HistogramFilterType::HistogramType;

  const HistogramType * histogram = histogramFilter->GetOutput();
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // Just for the sake of exercising the experimental
  // method~\cite{Popper2002}, we verify that the resulting histogram actually
  // have the size that we requested when we configured the filter. This can
  // be done by invoking the \code{Size()} method of the histogram and
  // printing out the result.
  //
  // \index{itk::Statistics::Histogram!Size()}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  const unsigned int histogramSize = histogram->Size();

  std::cout << "Histogram size " << histogramSize << std::endl;
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // Strictly speaking, the histogram computed here is the joint histogram of
  // the three RGB components. However, given that we set the resolution of
  // the green and blue channels to be just one bin, the histogram is in
  // practice representing just the red channel.  In the general case, we can
  // alway access the frequency of a particular channel in a joint histogram,
  // thanks to the fact that the histogram class offers a
  // \code{GetFrequency()} method that accepts a channel as argument. This is
  // illustrated in the following lines of code.
  //
  // \index{itk::Statistics::Histogram!GetFrequency()}
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  unsigned int channel = 0; // red channel

  std::cout << "Histogram of the red component" << std::endl;

  for (unsigned int bin = 0; bin < histogramSize; ++bin)
  {
    std::cout << "bin = " << bin << " frequency = ";
    std::cout << histogram->GetFrequency(bin, channel) << std::endl;
  }
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // In order to reinforce the concepts presented above, we modify now the
  // setup of the histogram filter in order to compute the histogram of the
  // green channel instead of the red one. This is done by simply changing the
  // number of bins desired on each channel and invoking the computation of
  // the filter again by calling the \code{Update()} method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  size[0] = 1;   // number of bins for the Red   channel
  size[1] = 255; // number of bins for the Green channel
  size[2] = 1;   // number of bins for the Blue  channel

  histogramFilter->SetHistogramSize(size);

  histogramFilter->Update();
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // The result can be verified now by setting the desired channel to green
  // and invoking the \code{GetFrequency()} method.
  //
  // Software Guide : EndLatex

  // Software Guide : BeginCodeSnippet
  channel = 1; // green channel

  std::cout << "Histogram of the green component" << std::endl;

  for (unsigned int bin = 0; bin < histogramSize; ++bin)
  {
    std::cout << "bin = " << bin << " frequency = ";
    std::cout << histogram->GetFrequency(bin, channel) << std::endl;
  }
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // To finalize the example, we do the same computation for the case of the
  // blue channel.
  //
  // Software Guide : EndLatex


  // Software Guide : BeginCodeSnippet
  size[0] = 1;   // number of bins for the Red   channel
  size[1] = 1;   // number of bins for the Green channel
  size[2] = 255; // number of bins for the Blue  channel

  histogramFilter->SetHistogramSize(size);

  histogramFilter->Update();
  // Software Guide : EndCodeSnippet


  // Software Guide : BeginLatex
  //
  // and verify the output.
  //
  // Software Guide : EndLatex


  // Software Guide : BeginCodeSnippet
  channel = 2; // blue channel

  std::cout << "Histogram of the blue component" << std::endl;

  for (unsigned int bin = 0; bin < histogramSize; ++bin)
  {
    std::cout << "bin = " << bin << " frequency = ";
    std::cout << histogram->GetFrequency(bin, channel) << std::endl;
  }
  // Software Guide : EndCodeSnippet

  return EXIT_SUCCESS;
}