/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

#include <fstream>
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
#include "itkTestingMacros.h"


int
itkMatrixImageWriteReadTest(int argc, char * argv[])
{
  if (argc < 1)
  {
    std::cerr << "Usage: " << itkNameOfTestExecutableMacro(argv) << " Input\n";
    return EXIT_FAILURE;
  }

  using MatrixPixelType = itk::Matrix<float, 3, 3>;
  using MatrixImageType = itk::Image<MatrixPixelType, 3>;

  auto matrixImage1 = MatrixImageType::New();

  MatrixImageType::SizeType size;
  size.Fill(10);

  MatrixImageType::IndexType start;
  start.Fill(0);

  MatrixImageType::RegionType region;
  region.SetIndex(start);
  region.SetSize(size);

  matrixImage1->SetRegions(region);
  matrixImage1->Allocate();

  MatrixPixelType matrixPixel;

  matrixPixel[0][0] = 1;
  matrixPixel[0][1] = 2;
  matrixPixel[0][2] = 3;

  matrixPixel[1][0] = 4;
  matrixPixel[1][1] = 5;
  matrixPixel[1][2] = 6;

  matrixPixel[2][0] = 7;
  matrixPixel[2][1] = 8;
  matrixPixel[2][2] = 9;

  itk::ImageRegionIterator<MatrixImageType> itr(matrixImage1, region);

  itr.GoToBegin();

  while (!itr.IsAtEnd())
  {
    itr.Set(matrixPixel);
    for (unsigned int i = 0; i < 3; ++i)
    {
      for (unsigned int j = 0; j < 3; ++j)
      {
        matrixPixel[i][j]++;
      }
    }
    ++itr;
  }

  using MatrixWriterType = itk::ImageFileWriter<MatrixImageType>;

  auto matrixWriter = MatrixWriterType::New();

  matrixWriter->SetInput(matrixImage1);
  matrixWriter->SetFileName(argv[1]);

  try
  {
    matrixWriter->Update();
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << excp << std::endl;
    return EXIT_FAILURE;
  }


  using MatrixReaderType = itk::ImageFileReader<MatrixImageType>;

  auto matrixReader = MatrixReaderType::New();

  matrixReader->SetFileName(argv[1]);

  try
  {
    matrixReader->Update();
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << excp << std::endl;
    return EXIT_FAILURE;
  }

  MatrixImageType::ConstPointer matrixImage2 = matrixReader->GetOutput();

  // Compare the read values to the original values
  const float tolerance = 1e-5;

  itk::ImageRegionConstIterator<MatrixImageType> tItr(matrixImage2, region);
  itk::ImageRegionConstIterator<MatrixImageType> mItr(matrixImage1, region);

  tItr.GoToBegin();
  mItr.GoToBegin();

  while (!mItr.IsAtEnd())
  {
    const MatrixPixelType matrixPixel1 = mItr.Get();
    const MatrixPixelType matrixPixel2 = tItr.Get();

    for (unsigned int i = 0; i < 3; ++i)
    {
      for (unsigned int j = 0; j < 3; ++j)
      {
        if (itk::Math::abs(matrixPixel1[i][j] - matrixPixel2[i][j]) > tolerance)
        {
          std::cerr << "Matrix read does not match expected values " << std::endl;
          std::cerr << "Index " << tItr.GetIndex() << std::endl;
          std::cerr << "Matrix read     " << std::endl << matrixPixel1 << std::endl;
          std::cerr << "Matrix expected " << std::endl << matrixPixel2 << std::endl;
          return EXIT_FAILURE;
        }
      }
    }
    ++mItr;
    ++tItr;
  }


  return EXIT_SUCCESS;
}