# ========================================================================== # # Copyright NumFOCUS # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0.txt # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # # ==========================================================================*/ import itk import sys from itk import ITKCommon from itk import ITKBinaryMathematicalMorphology from itk import ITKSmoothing from itk import ITKDistanceMap from itk import ITKImageIntensity from itk import ITKThresholding from itk import ITKImageGrid inputImage = sys.argv[1] radiusValue = int(sys.argv[2]) PixelType = itk.UC Dimension = 2 ImageType = itk.Image[PixelType, Dimension] StructuringElementType = itk.FlatStructuringElement[Dimension] radius = (radiusValue, radiusValue) structuringElement = StructuringElementType.Ball(radius) # create the reader reader = itk.ImageFileReader[ImageType].New(FileName=inputImage) sources = [] image = ITKCommon.Image[PixelType, Dimension].New() region = itk.ImageRegion.x2() region.SetSize((10, 10)) image.SetRegions(region) image.Allocate() sources.append(("ITKCommon", image)) sources.append(("ITKIOImageBase", reader.GetOutput())) OtsuType = ITKThresholding.OtsuThresholdImageFilter[ImageType, ImageType] otsu = OtsuType.New(reader) sources.append(("ITKThresholding", otsu.GetOutput())) flip = ITKImageGrid.FlipImageFilter[ImageType].New(reader) sources.append(("ITKImageGrid", flip.GetOutput())) absFilter = ITKImageIntensity.AbsImageFilter[ImageType, ImageType].New(reader) sources.append(("ITKImageIntensity", absFilter.GetOutput())) absFilter.InPlaceOff() BinaryDilateType = ITKBinaryMathematicalMorphology.BinaryDilateImageFilter[ ImageType, ImageType, StructuringElementType ] binaryDilateFilter = BinaryDilateType.New() binaryDilateFilter.SetInput(reader.GetOutput()) binaryDilateFilter.SetKernel(structuringElement) output = binaryDilateFilter.GetOutput() sources.append(("ITKBinaryMathematicalMorphology", output)) median = ITKSmoothing.MedianImageFilter[ImageType, ImageType].New(reader) sources.append(("ITKSmoothing", median.GetOutput())) distance = ITKDistanceMap.DanielssonDistanceMapImageFilter[ImageType, ImageType].New( reader ) sources.append(("ITKDistanceMap", distance.GetOutput())) dests = [] dotsu = OtsuType.New() dests.append(("ITKThresholding", dotsu)) dflip = ITKImageGrid.FlipImageFilter[ImageType].New() dests.append(("ITKImageGrid", dflip)) dabs = ITKImageIntensity.AbsImageFilter[ImageType, ImageType].New() dests.append(("ITKImageIntensity", dabs)) dbinaryDilateFilter = BinaryDilateType.New() dbinaryDilateFilter.SetKernel(structuringElement) dests.append(("ITKBinaryMathematicalMorphology", dbinaryDilateFilter)) dmedian = ITKSmoothing.MedianImageFilter[ImageType, ImageType].New() dests.append(("ITKSmoothing", dmedian)) DistanceMapType = ITKDistanceMap.DanielssonDistanceMapImageFilter[ImageType, ImageType] ddistance = DistanceMapType.New() dests.append(("ITKDistanceMap", ddistance)) nb = 0 failList = [] for sourceName, source in sources: for destinationName, destination in dests: nb += 1 destination.SetInput(source) try: destination.UpdateLargestPossibleRegion() print(f"{sourceName} -> {destinationName} pass") except RuntimeError as e: print(f"{sourceName} -> {destinationName} fail") print(e) failList.append((sourceName, destinationName)) print() print("%i tests succeed" % (nb - len(failList))) print("%i tests failed" % len(failList)) sys.exit(len(failList))