# ========================================================================== # # Copyright NumFOCUS # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0.txt # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # # ==========================================================================*/ # Ensure we can convert all Nifti metadata members to Python import sys import numpy as np import pathlib from pprint import pprint import itk nifti_image_2d_filepath = sys.argv[1] image = itk.imread(nifti_image_2d_filepath) metadata = dict(image) print('2D image') pprint(metadata) nifti_image_3d_filepath = sys.argv[2] image = itk.imread(nifti_image_3d_filepath, itk.F) metadata = dict(image) print('3D image') pprint(metadata) nifti_displacement_2D_filepath = sys.argv[3] field = itk.imread(nifti_displacement_2D_filepath, itk.F) metadata = dict(field) print('2D displacement field') pprint(metadata) nifti_displacement_3D_filepath = sys.argv[4] field = itk.imread(nifti_displacement_3D_filepath, itk.F) metadata = dict(field) print('3D displacement field') pprint(metadata)