/*========================================================================= Program: Visualization Toolkit Module: vtkOpenSlideReader.h Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. See Copyright.txt or http://www.kitware.com/Copyright.htm for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notice for more information. =========================================================================*/ /** * @class vtkOpenSlideReader * @brief read digital whole slide images supported by * openslide library * * vtkOpenSlideReader is a source object that uses openslide library to * read multiple supported image formats used for whole slide images in * microscopy community. * * @sa * vtkPTIFWriter */ #ifndef vtkOpenSlideReader_h #define vtkOpenSlideReader_h #include "vtkDomainsMicroscopyModule.h" // For export macro #include "vtkImageReader2.h" extern "C" { #include "openslide/openslide.h" // For openslide support } class VTKDOMAINSMICROSCOPY_EXPORT vtkOpenSlideReader : public vtkImageReader2 { public: static vtkOpenSlideReader *New(); vtkTypeMacro(vtkOpenSlideReader,vtkImageReader2); void PrintSelf(ostream& os, vtkIndent indent) override; /** * Is the given file supported ? */ int CanReadFile(const char* fname); /** * Get the file extensions for this format. * Returns a string with a space separated list of extensions in * the format .extension */ virtual const char* GetFileExtensions() { return ".ndpi .svs"; // TODO: Get exaustive list of formats } //@{ /** * Return a descriptive name for the file format that might be useful in a GUI. */ virtual const char* GetDescriptiveName() { return "Openslide::WholeSlideImage"; } protected: vtkOpenSlideReader() {} ~vtkOpenSlideReader(); //@} virtual void ExecuteInformation(); virtual void ExecuteDataWithInformation(vtkDataObject *out, vtkInformation *outInfo); private: openslide_t *openslide_handle; vtkOpenSlideReader(const vtkOpenSlideReader&) = delete; void operator=(const vtkOpenSlideReader&) = delete; }; #endif