// python wrapper for vtkMINCImageReader // #define VTK_WRAPPING_CXX #define VTK_STREAMS_FWD_ONLY #include "vtkPythonArgs.h" #include "vtkPythonOverload.h" #include "vtkConfigure.h" #include #include #include "vtkVariant.h" #include "vtkIndent.h" #include "vtkMINCImageReader.h" extern "C" { VTK_ABI_EXPORT void PyVTKAddFile_vtkMINCImageReader(PyObject *); } extern "C" { VTK_ABI_EXPORT PyObject *PyvtkMINCImageReader_ClassNew(); } #ifndef DECLARED_PyvtkImageReader2_ClassNew extern "C" { PyObject *PyvtkImageReader2_ClassNew(); } #define DECLARED_PyvtkImageReader2_ClassNew #endif static const char *PyvtkMINCImageReader_Doc = "vtkMINCImageReader - A reader for MINC files.\n\n" "Superclass: vtkImageReader2\n\n" "MINC is a NetCDF-based medical image file format that was developed\n" "at the Montreal Neurological Institute in 1992. This class will read\n" "a MINC file into VTK, rearranging the data to match the VTK x, y, and\n" "z dimensions, and optionally rescaling real-valued data to VTK_FLOAT\n" "if RescaleRealValuesOn() is set. If RescaleRealValues is off, then\n" "the data will be stored in its original data type and the\n" "GetRescaleSlope(), GetRescaleIntercept() method can be used to\n" "retrieve global rescaling parameters. If the original file had a time\n" "dimension, the SetTimeStep() method can be used to specify a time\n" "step to read. All of the original header information can be accessed\n" "though the GetImageAttributes() method.\n" "@sa\n" "vtkMINCImageWriter vtkMINCImageAttributes@par Thanks: Thanks to David\n" "Gobbi for writing this class and Atamai Inc. for contributing it to\n" "VTK.\n\n"; static PyObject * PyvtkMINCImageReader_IsTypeOf(PyObject *, PyObject *args) { vtkPythonArgs ap(args, "IsTypeOf"); char *temp0 = nullptr; PyObject *result = nullptr; if (ap.CheckArgCount(1) && ap.GetValue(temp0)) { int tempr = vtkMINCImageReader::IsTypeOf(temp0); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_IsA(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "IsA"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); char *temp0 = nullptr; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetValue(temp0)) { int tempr = (ap.IsBound() ? op->IsA(temp0) : op->vtkMINCImageReader::IsA(temp0)); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_SafeDownCast(PyObject *, PyObject *args) { vtkPythonArgs ap(args, "SafeDownCast"); vtkObjectBase *temp0 = nullptr; PyObject *result = nullptr; if (ap.CheckArgCount(1) && ap.GetVTKObject(temp0, "vtkObjectBase")) { vtkMINCImageReader *tempr = vtkMINCImageReader::SafeDownCast(temp0); if (!ap.ErrorOccurred()) { result = ap.BuildVTKObject(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_NewInstance(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "NewInstance"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { vtkMINCImageReader *tempr = (ap.IsBound() ? op->NewInstance() : op->vtkMINCImageReader::NewInstance()); if (!ap.ErrorOccurred()) { result = ap.BuildVTKObject(tempr); if (result && PyVTKObject_Check(result)) { PyVTKObject_GetObject(result)->UnRegister(0); PyVTKObject_SetFlag(result, VTK_PYTHON_IGNORE_UNREGISTER, 1); } } } return result; } static PyObject * PyvtkMINCImageReader_SetFileName(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "SetFileName"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); char *temp0 = nullptr; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetValue(temp0)) { if (ap.IsBound()) { op->SetFileName(temp0); } else { op->vtkMINCImageReader::SetFileName(temp0); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_GetFileExtensions(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetFileExtensions"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { const char *tempr = (ap.IsBound() ? op->GetFileExtensions() : op->vtkMINCImageReader::GetFileExtensions()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetDescriptiveName(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetDescriptiveName"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { const char *tempr = (ap.IsBound() ? op->GetDescriptiveName() : op->vtkMINCImageReader::GetDescriptiveName()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_CanReadFile(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "CanReadFile"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); char *temp0 = nullptr; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetValue(temp0)) { int tempr = (ap.IsBound() ? op->CanReadFile(temp0) : op->vtkMINCImageReader::CanReadFile(temp0)); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetDirectionCosines(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetDirectionCosines"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { vtkMatrix4x4 *tempr = (ap.IsBound() ? op->GetDirectionCosines() : op->vtkMINCImageReader::GetDirectionCosines()); if (!ap.ErrorOccurred()) { result = ap.BuildVTKObject(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetRescaleSlope(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetRescaleSlope"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { double tempr = (ap.IsBound() ? op->GetRescaleSlope() : op->vtkMINCImageReader::GetRescaleSlope()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetRescaleIntercept(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetRescaleIntercept"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { double tempr = (ap.IsBound() ? op->GetRescaleIntercept() : op->vtkMINCImageReader::GetRescaleIntercept()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_SetRescaleRealValues(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "SetRescaleRealValues"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); int temp0; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetValue(temp0)) { if (ap.IsBound()) { op->SetRescaleRealValues(temp0); } else { op->vtkMINCImageReader::SetRescaleRealValues(temp0); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_RescaleRealValuesOn(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "RescaleRealValuesOn"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { if (ap.IsBound()) { op->RescaleRealValuesOn(); } else { op->vtkMINCImageReader::RescaleRealValuesOn(); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_RescaleRealValuesOff(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "RescaleRealValuesOff"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { if (ap.IsBound()) { op->RescaleRealValuesOff(); } else { op->vtkMINCImageReader::RescaleRealValuesOff(); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_GetRescaleRealValues(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetRescaleRealValues"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { int tempr = (ap.IsBound() ? op->GetRescaleRealValues() : op->vtkMINCImageReader::GetRescaleRealValues()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetDataRange_s1(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetDataRange"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); int sizer = 2; PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { double *tempr = (ap.IsBound() ? op->GetDataRange() : op->vtkMINCImageReader::GetDataRange()); if (!ap.ErrorOccurred()) { result = ap.BuildTuple(tempr, sizer); } } return result; } static PyObject * PyvtkMINCImageReader_GetDataRange_s2(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetDataRange"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); const int size0 = 2; double temp0[2]; double save0[2]; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetArray(temp0, size0)) { ap.SaveArray(temp0, save0, size0); if (ap.IsBound()) { op->GetDataRange(temp0); } else { op->vtkMINCImageReader::GetDataRange(temp0); } if (ap.ArrayHasChanged(temp0, save0, size0) && !ap.ErrorOccurred()) { ap.SetArray(0, temp0, size0); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_GetDataRange(PyObject *self, PyObject *args) { int nargs = vtkPythonArgs::GetArgCount(self, args); switch(nargs) { case 0: return PyvtkMINCImageReader_GetDataRange_s1(self, args); case 1: return PyvtkMINCImageReader_GetDataRange_s2(self, args); } vtkPythonArgs::ArgCountError(nargs, "GetDataRange"); return nullptr; } static PyObject * PyvtkMINCImageReader_GetNumberOfTimeSteps(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetNumberOfTimeSteps"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { int tempr = (ap.IsBound() ? op->GetNumberOfTimeSteps() : op->vtkMINCImageReader::GetNumberOfTimeSteps()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_SetTimeStep(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "SetTimeStep"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); int temp0; PyObject *result = nullptr; if (op && ap.CheckArgCount(1) && ap.GetValue(temp0)) { if (ap.IsBound()) { op->SetTimeStep(temp0); } else { op->vtkMINCImageReader::SetTimeStep(temp0); } if (!ap.ErrorOccurred()) { result = ap.BuildNone(); } } return result; } static PyObject * PyvtkMINCImageReader_GetTimeStep(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetTimeStep"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { int tempr = (ap.IsBound() ? op->GetTimeStep() : op->vtkMINCImageReader::GetTimeStep()); if (!ap.ErrorOccurred()) { result = ap.BuildValue(tempr); } } return result; } static PyObject * PyvtkMINCImageReader_GetImageAttributes(PyObject *self, PyObject *args) { vtkPythonArgs ap(self, args, "GetImageAttributes"); vtkObjectBase *vp = ap.GetSelfPointer(self, args); vtkMINCImageReader *op = static_cast(vp); PyObject *result = nullptr; if (op && ap.CheckArgCount(0)) { vtkMINCImageAttributes *tempr = (ap.IsBound() ? op->GetImageAttributes() : op->vtkMINCImageReader::GetImageAttributes()); if (!ap.ErrorOccurred()) { result = ap.BuildVTKObject(tempr); } } return result; } static PyMethodDef PyvtkMINCImageReader_Methods[] = { {"IsTypeOf", PyvtkMINCImageReader_IsTypeOf, METH_VARARGS, "V.IsTypeOf(string) -> int\nC++: static vtkTypeBool IsTypeOf(const char *type)\n\nReturn 1 if this class type is the same type of (or a subclass\nof) the named class. Returns 0 otherwise. This method works in\ncombination with vtkTypeMacro found in vtkSetGet.h.\n"}, {"IsA", PyvtkMINCImageReader_IsA, METH_VARARGS, "V.IsA(string) -> int\nC++: vtkTypeBool IsA(const char *type) override;\n\nReturn 1 if this class is the same type of (or a subclass of) the\nnamed class. Returns 0 otherwise. This method works in\ncombination with vtkTypeMacro found in vtkSetGet.h.\n"}, {"SafeDownCast", PyvtkMINCImageReader_SafeDownCast, METH_VARARGS, "V.SafeDownCast(vtkObjectBase) -> vtkMINCImageReader\nC++: static vtkMINCImageReader *SafeDownCast(vtkObjectBase *o)\n\n"}, {"NewInstance", PyvtkMINCImageReader_NewInstance, METH_VARARGS, "V.NewInstance() -> vtkMINCImageReader\nC++: vtkMINCImageReader *NewInstance()\n\n"}, {"SetFileName", PyvtkMINCImageReader_SetFileName, METH_VARARGS, "V.SetFileName(string)\nC++: void SetFileName(const char *name) override;\n\nSet the file name.\n"}, {"GetFileExtensions", PyvtkMINCImageReader_GetFileExtensions, METH_VARARGS, "V.GetFileExtensions() -> string\nC++: const char *GetFileExtensions() override;\n\nGet the entension for this file format.\n"}, {"GetDescriptiveName", PyvtkMINCImageReader_GetDescriptiveName, METH_VARARGS, "V.GetDescriptiveName() -> string\nC++: const char *GetDescriptiveName() override;\n\nGet the name of this file format.\n"}, {"CanReadFile", PyvtkMINCImageReader_CanReadFile, METH_VARARGS, "V.CanReadFile(string) -> int\nC++: int CanReadFile(const char *name) override;\n\nTest whether the specified file can be read.\n"}, {"GetDirectionCosines", PyvtkMINCImageReader_GetDirectionCosines, METH_VARARGS, "V.GetDirectionCosines() -> vtkMatrix4x4\nC++: virtual vtkMatrix4x4 *GetDirectionCosines()\n\nGet a matrix that describes the orientation of the data. The\nthree columns of the matrix are the direction cosines for the x,\ny and z dimensions respectively.\n"}, {"GetRescaleSlope", PyvtkMINCImageReader_GetRescaleSlope, METH_VARARGS, "V.GetRescaleSlope() -> float\nC++: virtual double GetRescaleSlope()\n\nGet the slope and intercept for rescaling the scalar values to\nreal data values. To convert scalar values to real values, use\nthe equation y = x*RescaleSlope + RescaleIntercept.\n"}, {"GetRescaleIntercept", PyvtkMINCImageReader_GetRescaleIntercept, METH_VARARGS, "V.GetRescaleIntercept() -> float\nC++: virtual double GetRescaleIntercept()\n\nGet the slope and intercept for rescaling the scalar values to\nreal data values. To convert scalar values to real values, use\nthe equation y = x*RescaleSlope + RescaleIntercept.\n"}, {"SetRescaleRealValues", PyvtkMINCImageReader_SetRescaleRealValues, METH_VARARGS, "V.SetRescaleRealValues(int)\nC++: virtual void SetRescaleRealValues(int _arg)\n\nRescale real data values to float. If this is done, the\nRescaleSlope and RescaleIntercept will be set to 1 and 0\nrespectively. This is off by default.\n"}, {"RescaleRealValuesOn", PyvtkMINCImageReader_RescaleRealValuesOn, METH_VARARGS, "V.RescaleRealValuesOn()\nC++: virtual void RescaleRealValuesOn()\n\nRescale real data values to float. If this is done, the\nRescaleSlope and RescaleIntercept will be set to 1 and 0\nrespectively. This is off by default.\n"}, {"RescaleRealValuesOff", PyvtkMINCImageReader_RescaleRealValuesOff, METH_VARARGS, "V.RescaleRealValuesOff()\nC++: virtual void RescaleRealValuesOff()\n\nRescale real data values to float. If this is done, the\nRescaleSlope and RescaleIntercept will be set to 1 and 0\nrespectively. This is off by default.\n"}, {"GetRescaleRealValues", PyvtkMINCImageReader_GetRescaleRealValues, METH_VARARGS, "V.GetRescaleRealValues() -> int\nC++: virtual int GetRescaleRealValues()\n\nRescale real data values to float. If this is done, the\nRescaleSlope and RescaleIntercept will be set to 1 and 0\nrespectively. This is off by default.\n"}, {"GetDataRange", PyvtkMINCImageReader_GetDataRange, METH_VARARGS, "V.GetDataRange() -> (float, float)\nC++: virtual double *GetDataRange()\nV.GetDataRange([float, float])\nC++: virtual void GetDataRange(double range[2])\n\nGet the scalar range of the output from the information in the\nfile header. This is more efficient that computing the scalar\nrange, but in some cases the MINC file stores an incorrect\nvalid_range and the DataRange will be incorrect.\n"}, {"GetNumberOfTimeSteps", PyvtkMINCImageReader_GetNumberOfTimeSteps, METH_VARARGS, "V.GetNumberOfTimeSteps() -> int\nC++: virtual int GetNumberOfTimeSteps()\n\nGet the number of time steps in the file.\n"}, {"SetTimeStep", PyvtkMINCImageReader_SetTimeStep, METH_VARARGS, "V.SetTimeStep(int)\nC++: virtual void SetTimeStep(int _arg)\n\nSet the time step to read.\n"}, {"GetTimeStep", PyvtkMINCImageReader_GetTimeStep, METH_VARARGS, "V.GetTimeStep() -> int\nC++: virtual int GetTimeStep()\n\nSet the time step to read.\n"}, {"GetImageAttributes", PyvtkMINCImageReader_GetImageAttributes, METH_VARARGS, "V.GetImageAttributes() -> vtkMINCImageAttributes\nC++: virtual vtkMINCImageAttributes *GetImageAttributes()\n\nGet the image attributes, which contain patient information and\nother useful metadata.\n"}, {nullptr, nullptr, 0, nullptr} }; static PyTypeObject PyvtkMINCImageReader_Type = { PyVarObject_HEAD_INIT(&PyType_Type, 0) "vtkIOMINCPython.vtkMINCImageReader", // tp_name sizeof(PyVTKObject), // tp_basicsize 0, // tp_itemsize PyVTKObject_Delete, // tp_dealloc 0, // tp_print nullptr, // tp_getattr nullptr, // tp_setattr nullptr, // tp_compare PyVTKObject_Repr, // tp_repr nullptr, // tp_as_number nullptr, // tp_as_sequence nullptr, // tp_as_mapping nullptr, // tp_hash nullptr, // tp_call PyVTKObject_String, // tp_str PyObject_GenericGetAttr, // tp_getattro PyObject_GenericSetAttr, // tp_setattro &PyVTKObject_AsBuffer, // tp_as_buffer Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_BASETYPE, // tp_flags PyvtkMINCImageReader_Doc, // tp_doc PyVTKObject_Traverse, // tp_traverse nullptr, // tp_clear nullptr, // tp_richcompare offsetof(PyVTKObject, vtk_weakreflist), // tp_weaklistoffset nullptr, // tp_iter nullptr, // tp_iternext nullptr, // tp_methods nullptr, // tp_members PyVTKObject_GetSet, // tp_getset nullptr, // tp_base nullptr, // tp_dict nullptr, // tp_descr_get nullptr, // tp_descr_set offsetof(PyVTKObject, vtk_dict), // tp_dictoffset nullptr, // tp_init nullptr, // tp_alloc PyVTKObject_New, // tp_new PyObject_GC_Del, // tp_free nullptr, // tp_is_gc nullptr, // tp_bases nullptr, // tp_mro nullptr, // tp_cache nullptr, // tp_subclasses nullptr, // tp_weaklist VTK_WRAP_PYTHON_SUPPRESS_UNINITIALIZED }; static vtkObjectBase *PyvtkMINCImageReader_StaticNew() { return vtkMINCImageReader::New(); } PyObject *PyvtkMINCImageReader_ClassNew() { PyVTKClass_Add( &PyvtkMINCImageReader_Type, PyvtkMINCImageReader_Methods, "vtkMINCImageReader", &PyvtkMINCImageReader_StaticNew); PyTypeObject *pytype = &PyvtkMINCImageReader_Type; if ((pytype->tp_flags & Py_TPFLAGS_READY) != 0) { return (PyObject *)pytype; } #if !defined(VTK_PY3K) && PY_VERSION_HEX >= 0x02060000 pytype->tp_flags |= Py_TPFLAGS_HAVE_NEWBUFFER; #endif pytype->tp_base = (PyTypeObject *)PyvtkImageReader2_ClassNew(); PyType_Ready(pytype); return (PyObject *)pytype; } void PyVTKAddFile_vtkMINCImageReader( PyObject *dict) { PyObject *o; o = PyvtkMINCImageReader_ClassNew(); if (o && PyDict_SetItemString(dict, "vtkMINCImageReader", o) != 0) { Py_DECREF(o); } }