/*========================================================================= * * Copyright NumFOCUS * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * https://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ #ifndef itkPyVnl_hxx #define itkPyVnl_hxx #include namespace itk { template PyObject * PyVnl::_GetArrayViewFromVnlVector(VectorType * vector) { PyObject * memoryView = NULL; Py_buffer pyBuffer; memset(&pyBuffer, 0, sizeof(Py_buffer)); size_t elementSize = sizeof(DataType); int res = 0; if (!vector) { throw std::runtime_error("Input vector is null"); } DataType * buffer = vector->data_block(); void * vectorBuffer = (void *)(buffer); // Computing the length of data Py_ssize_t len = vector->size(); len *= elementSize; res = PyBuffer_FillInfo(&pyBuffer, NULL, (void *)vectorBuffer, len, 0, PyBUF_CONTIG); memoryView = PyMemoryView_FromBuffer(&pyBuffer); PyBuffer_Release(&pyBuffer); return memoryView; } template auto PyVnl::_GetVnlVectorFromArray(PyObject * arr, PyObject * shape) -> const VectorType { PyObject * obj = NULL; PyObject * shapeseq = NULL; PyObject * item = NULL; Py_ssize_t bufferLength; Py_buffer pyBuffer; memset(&pyBuffer, 0, sizeof(Py_buffer)); size_t numberOfElements = 1; const void * buffer; unsigned int dimension = 0; size_t elementSize = sizeof(DataType); size_t len = 1; if (PyObject_GetBuffer(arr, &pyBuffer, PyBUF_CONTIG) == -1) { PyErr_SetString(PyExc_RuntimeError, "Cannot get an instance of NumPy array."); PyBuffer_Release(&pyBuffer); return VectorType(); } else { bufferLength = pyBuffer.len; buffer = pyBuffer.buf; } obj = shape; shapeseq = PySequence_Fast(obj, "expected sequence"); dimension = PySequence_Size(obj); item = PySequence_Fast_GET_ITEM(shapeseq, 0); // Only one dimension numberOfElements = (size_t)PyInt_AsLong(item); len = numberOfElements * elementSize; if (bufferLength != len) { PyErr_SetString(PyExc_RuntimeError, "Size mismatch of vector and Buffer."); PyBuffer_Release(&pyBuffer); return VectorType(); } DataType * data = (DataType *)buffer; VectorType output(data, numberOfElements); PyBuffer_Release(&pyBuffer); return output; } template PyObject * PyVnl::_GetArrayViewFromVnlMatrix(MatrixType * matrix) { PyObject * memoryView = NULL; Py_buffer pyBuffer; memset(&pyBuffer, 0, sizeof(Py_buffer)); size_t elementSize = sizeof(DataType); int res = 0; if (!matrix) { throw std::runtime_error("Input matrix is null"); } DataType * buffer = matrix->data_block(); void * matrixBuffer = (void *)(buffer); // Computing the length of data Py_ssize_t len = matrix->size(); len *= elementSize; res = PyBuffer_FillInfo(&pyBuffer, NULL, (void *)matrixBuffer, len, 0, PyBUF_CONTIG); memoryView = PyMemoryView_FromBuffer(&pyBuffer); PyBuffer_Release(&pyBuffer); return memoryView; } template auto PyVnl::_GetVnlMatrixFromArray(PyObject * arr, PyObject * shape) -> const MatrixType { PyObject * obj = NULL; PyObject * shapeseq = NULL; PyObject * item = NULL; Py_ssize_t bufferLength; Py_buffer pyBuffer; memset(&pyBuffer, 0, sizeof(Py_buffer)); size_t numberOfElements = 1; const void * buffer; unsigned int dimension = 0; size_t elementSize = sizeof(DataType); size_t len = 1; unsigned int size[2]; if (PyObject_GetBuffer(arr, &pyBuffer, PyBUF_CONTIG) == -1) { PyErr_SetString(PyExc_RuntimeError, "Cannot get an instance of NumPy array."); PyBuffer_Release(&pyBuffer); return MatrixType(); } else { bufferLength = pyBuffer.len; buffer = pyBuffer.buf; } obj = shape; shapeseq = PySequence_Fast(obj, "expected sequence"); dimension = PySequence_Size(obj); for (unsigned int i = 0; i < 2; ++i) { item = PySequence_Fast_GET_ITEM(shapeseq, i); size[i] = static_cast(PyInt_AsLong(item)); numberOfElements *= size[i]; } len = numberOfElements * elementSize; if (bufferLength != len) { PyErr_SetString(PyExc_RuntimeError, "Size mismatch of matrix and Buffer."); PyBuffer_Release(&pyBuffer); return MatrixType(); } DataType * data = (DataType *)buffer; MatrixType output(data, size[0], size[1]); PyBuffer_Release(&pyBuffer); return output; } } // namespace itk #endif