/*========================================================================= * * Copyright NumFOCUS * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * https://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ /*========================================================================= * * Portions of this file are subject to the VTK Toolkit Version 3 copyright. * * Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen * * For complete copyright, license and disclaimer of warranty information * please refer to the NOTICE file at the top of the ITK source tree. * *=========================================================================*/ #ifndef itkStimulateImageIO_h #define itkStimulateImageIO_h #include "ITKIOStimulateExport.h" #include #include "itkImageIOBase.h" namespace itk { /** \class StimulateImageIO * * \brief ImageIO class for reading SDT/SPR (Stimulate) images * This format is similar to a MetaImageIO file: * The user should specify the .spr file (not the data file : .sdt) * * This is based on the notes from: * * https://www.cmrr.umn.edu/stimulate/stimUsersGuide/node57.html * * It has been tested on: * * ftp://ftp.cmrr.umn.edu/pub/stimulate/data/ * * \warning Beware of the scalar range of some files (See GetDisplayRange). * * \author Mathieu Malaterre * CREATIS team at INSA - Lyon 2002 * https://www.creatis.insa-lyon.fr * * \ingroup IOFilters * * \ingroup ITKIOStimulate */ class ITKIOStimulate_EXPORT StimulateImageIO : public ImageIOBase { public: ITK_DISALLOW_COPY_AND_MOVE(StimulateImageIO); /** Standard class type aliases. */ using Self = StimulateImageIO; using Superclass = ImageIOBase; using Pointer = SmartPointer; /** Method for creation through the object factory. */ itkNewMacro(Self); /** \see LightObject::GetNameOfClass() */ itkOverrideGetNameOfClassMacro(StimulateImageIO); /*-------- This part of the interface deals with reading data. ------ */ /** Determine the file type. Returns true if this ImageIO can read the * file specified. */ bool CanReadFile(const char *) override; /** Set the spacing and dimension information for the current filename. */ void ReadImageInformation() override; /** Reads the data from disk into the memory buffer provided. */ void Read(void * buffer) override; /*-------- This part of the interfaces deals with writing data. ----- */ /** Determine the file type. Returns true if this ImageIO can read the * file specified. */ bool CanWriteFile(const char *) override; /** Writes the spacing and dimensions of the image. * Assumes SetFileName has been called with a valid file name. */ void WriteImageInformation() override {} /** Writes the data to disk from the memory buffer provided. Make sure * that the IORegion has been set properly. */ void Write(const void * buffer) override; /** Two values used for applying intensity windowing to the data set. The pair * of numbers represent a low value and a high value. Pixel values below the * low_value will be displayed as black and voxels with values above the * high_value will be displayed as white. Pixels with values within the display * range are displayed with a grey value that is scaled linearly between the * low_value and high_value. */ itkGetVectorMacro(DisplayRange, const float, 2); const float & GetHighDisplayValue() { return m_DisplayRange[1]; } const float & GetLowDisplayValue() { return m_DisplayRange[1]; } protected: StimulateImageIO(); ~StimulateImageIO() override; void PrintSelf(std::ostream & os, Indent indent) const override; void InternalReadImageInformation(std::ifstream & file); private: std::string m_DataFileName{}; char m_SdtOrient[256]{}; float m_DisplayRange[2]{}; char m_FidName[256]{}; }; } // end namespace itk #endif // itkStimulateImageIO_h