/*========================================================================= * * Copyright NumFOCUS * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * https://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ #include "itkImageFileWriter.h" #include "itkImageFileReader.h" #include "itkTimeProbesCollectorBase.h" #include "itkTIFFImageIO.h" #include "itkTestingMacros.h" // Specific ImageIO test namespace { template int itkLargeTIFFImageWriteReadTestHelper(std::string filename, typename TImage::SizeType size) { using ImageType = TImage; using PixelType = typename ImageType::PixelType; using WriterType = itk::ImageFileWriter; using ReaderType = itk::ImageFileReader; using IteratorType = itk::ImageRegionIterator; using ConstIteratorType = itk::ImageRegionConstIterator; using SizeValueType = itk::SizeValueType; typename ImageType::RegionType region; typename ImageType::IndexType index; itk::TimeProbesCollectorBase chronometer; { // Write block auto image = ImageType::New(); index.Fill(0); region.SetSize(size); region.SetIndex(index); image->SetRegions(region); SizeValueType numberOfPixels = 1; for (unsigned int i = 0; i < ImageType::ImageDimension; ++i) { numberOfPixels *= static_cast(region.GetSize(i)); } const SizeValueType oneMebiByte = SizeValueType(1024) * SizeValueType(1024); const SizeValueType sizeInBytes = sizeof(PixelType) * numberOfPixels; const SizeValueType sizeInMebiBytes = sizeInBytes / oneMebiByte; std::cout << "Trying to allocate an image of size " << sizeInMebiBytes << " MiB " << std::endl; chronometer.Start("Allocate"); image->Allocate(); chronometer.Stop("Allocate"); std::cout << "Initializing pixel values" << std::endl; IteratorType itr(image, region); itr.GoToBegin(); PixelType pixelValue{}; chronometer.Start("Initializing"); while (!itr.IsAtEnd()) { itr.Set(pixelValue); ++pixelValue; ++itr; } chronometer.Stop("Initializing"); std::cout << "Trying to write the image to disk" << std::endl; auto writer = WriterType::New(); writer->SetInput(image); writer->SetFileName(filename); chronometer.Start("Write"); ITK_TRY_EXPECT_NO_EXCEPTION(writer->Update()); chronometer.Stop("Write"); image = nullptr; } // end write block to free the memory std::cout << "Trying to read the image back from disk" << std::endl; auto reader = ReaderType::New(); reader->SetFileName(filename); itk::TIFFImageIO::Pointer io = itk::TIFFImageIO::New(); reader->SetImageIO(io); chronometer.Start("Read"); ITK_TRY_EXPECT_NO_EXCEPTION(reader->Update()); chronometer.Stop("Read"); typename ImageType::ConstPointer readImage = reader->GetOutput(); ConstIteratorType ritr(readImage, region); ritr.GoToBegin(); std::cout << "Comparing the pixel values..." << std::endl; PixelType pixelValue{}; chronometer.Start("Compare"); while (!ritr.IsAtEnd()) { if (ritr.Get() != pixelValue) { std::cerr << "Test failed!" << std::endl; std::cerr << "Error while comparing pixel value at index: " << ritr.GetIndex() << std::endl; std::cerr << "Expected: " << pixelValue << ", but got: " << ritr.Get() << std::endl; return EXIT_FAILURE; } ++pixelValue; ++ritr; } chronometer.Stop("Compare"); chronometer.Report(std::cout); std::cout << std::endl; std::cout << "Test PASSED !" << std::endl; return EXIT_SUCCESS; } } // namespace int itkLargeTIFFImageWriteReadTest(int argc, char * argv[]) { if (argc < 3) { std::cout << "Usage: " << itkNameOfTestExecutableMacro(argv) << " outputFileName" << " numberOfPixelsInOneDimension" << " [numberOfZslices]" << std::endl; return EXIT_FAILURE; } const std::string filename = argv[1]; if (argc == 3) { constexpr unsigned int Dimension = 2; using PixelType = unsigned short; using ImageType = itk::Image; ImageType::SizeType size; size.Fill(atol(argv[2])); return itkLargeTIFFImageWriteReadTestHelper(filename, size); } else { constexpr unsigned int Dimension = 3; using PixelType = unsigned short; using ImageType = itk::Image; ImageType::SizeType size; size.Fill(atol(argv[2])); size[2] = atol(argv[3]); return itkLargeTIFFImageWriteReadTestHelper(filename, size); } }