/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

#include <iostream>
#include <fstream>
#include "itkMatlabTransformIOFactory.h"
#include "itkTransformFileWriter.h"
#include "itkTransformFileReader.h"
#include "itkAffineTransform.h"
#include "itkTransformFactory.h"
#include "itkSimilarity2DTransform.h"
#include "itkBSplineTransform.h"
#include "itksys/SystemTools.hxx"

template <typename TParametersValueType>
static int
oneTest(const char * goodname, const char * badname)
{
  unsigned int i;
  using AffineTransformType = itk::AffineTransform<TParametersValueType, 4>;
  using AffineTransformTypeNotRegistered = itk::AffineTransform<TParametersValueType, 10>;
  auto affine = AffineTransformType::New();
  using TransformWriterType = itk::TransformFileWriterTemplate<TParametersValueType>;
  using TransformReaderType = itk::TransformFileReaderTemplate<TParametersValueType>;

  itk::ObjectFactoryBase::RegisterFactory(itk::MatlabTransformIOFactory::New());


  // Set its parameters
  {
    typename AffineTransformType::ParametersType p = affine->GetParameters();
    for (i = 0; i < p.GetSize(); ++i)
    {
      p[i] = i;
    }
    affine->SetParameters(p);
  }
  {
    typename AffineTransformType::FixedParametersType p = affine->GetFixedParameters();
    for (i = 0; i < p.GetSize(); ++i)
    {
      p[i] = i;
    }
    affine->SetFixedParameters(p);
  }
  auto writer = TransformWriterType::New();
  auto reader = TransformReaderType::New();

  // writer->AddTransform(affine);
  writer->SetInput(affine);

  writer->SetFileName(goodname);
  reader->SetFileName(goodname);

  // Testing writing std::cout << "Testing write : ";
  affine->Print(std::cout);
  try
  {
    writer->Update();
    std::cout << "Writing " << goodname << " to the disk is done." << std::endl;
    std::cout << std::endl;
    std::cout << "Testing read : " << std::endl;
    reader->Update();
    std::cout << goodname << "is read from disk successfully." << std::endl;
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "Error while saving the transforms" << std::endl;
    std::cerr << excp << std::endl;
    std::cout << "[FAILED]" << std::endl;
    return EXIT_FAILURE;
  }


  try
  {
    const typename TransformReaderType::TransformListType * list = reader->GetTransformList();
    auto                                                    lit = list->begin();
    while (lit != list->end())
    {
      (*lit)->Print(std::cout);
      ++lit;
    }
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "Error while saving the transforms" << std::endl;
    std::cerr << excp << std::endl;
    std::cout << "[FAILED]" << std::endl;
    return EXIT_FAILURE;
  }


  std::cout << "\n\nCreating bad writer" << std::endl;
  auto Bogus = AffineTransformTypeNotRegistered::New();

  // Set its parameters
  {
    typename AffineTransformType::ParametersType p = Bogus->GetParameters();
    for (i = 0; i < p.GetSize(); ++i)
    {
      p[i] = i;
    }
    Bogus->SetParameters(p);
  }
  {
    typename AffineTransformType::FixedParametersType p = Bogus->GetFixedParameters();
    for (i = 0; i < p.GetSize(); ++i)
    {
      p[i] = i;
    }
    Bogus->SetFixedParameters(p);
  }

  auto badwriter = TransformWriterType::New();
  auto badreader = TransformReaderType::New();

  badwriter->AddTransform(Bogus);
  badwriter->SetFileName(badname);

  badreader->SetFileName(badname);

  // Testing writing
  std::cout << "Testing write of non register transform : " << std::endl;
  std::cout << std::flush;
  try
  {
    badwriter->Update();
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "Error while saving the transforms" << std::endl;
    std::cerr << excp << std::endl;
    std::cout << "[FAILED]" << std::endl;
    return EXIT_FAILURE;
  }

  // Testing writing
  std::cout << "Testing read of non register transform : " << std::endl;
  std::cout << std::flush;
  bool caught = false;
  try
  {
    badreader->Update();
  }
  catch (const itk::ExceptionObject & excp)
  {
    caught = true;
    std::cout << "Caught exception as expected" << std::endl;
    std::cout << excp << std::endl;
  }
  if (!caught)
  {
    std::cerr << "Did not catch non registered transform" << std::endl;
    std::cout << "[FAILED]" << std::endl;
    return EXIT_FAILURE;
  }
  std::cout << "[PASSED]" << std::endl;

  return EXIT_SUCCESS;
}

//
// test endless loop bug in transform reader, triggered by no
// EOL at end of file.
// This test will exercise this reported bug:
// https://public.kitware.com/Bug/view.php?id=7028
template <typename TParametersValueType>
int
secondTest()
{
  std::filebuf fb;
  fb.open("IllegalTransform.txt", std::ios::out);
  std::ostream os(&fb);
  os << "#Insight Transform File V1.0" << std::endl
     << "#Transform 0" << std::endl
     << "Transform: AffineTransform_double_10_10" << std::endl
     << "Parameters: "
     << "  0 1 2 3 4 5 6 7 8 9 10 11 12"
     << " 13 14 15 16 17 18 19 20 21 22" << std::endl
     << "FixedParameters: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18";
  fb.close();

  using TransformReaderType = itk::TransformFileReaderTemplate<TParametersValueType>;
  auto reader = TransformReaderType::New();
  reader->SetFileName("IllegalTransform.txt");
  try
  {
    reader->Update();
    std::cerr << "FAILED to throw expected exception" << std::endl;
    const typename TransformReaderType::TransformListType * list = reader->GetTransformList();
    auto                                                    lit = list->begin();
    while (lit != list->end())
    {
      (*lit)->Print(std::cout);
      ++lit;
    }
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "EXPECTED Error while reading the transforms" << std::endl;
    std::cerr << excp << std::endl;
    std::cout << "[SUCCESS]" << std::endl;
    return EXIT_SUCCESS;
  }
  return EXIT_FAILURE;
}

//
// test reading a dummy file -- should not crash
template <typename TParametersValueType>
int
thirdTest()
{
  std::filebuf fb;
  fb.open("IllegalMat.mat", std::ios::out);
  std::ostream os(&fb);
  os << "Baz, Bar" << std::endl;
  fb.close();

  using TransformReaderType = itk::TransformFileReaderTemplate<TParametersValueType>;
  auto reader = TransformReaderType::New();
  reader->SetFileName("IllegalMat.Mat");
  try
  {
    reader->Update();
    std::cerr << "FAILED to throw expected exception" << std::endl;
  }
  catch (const itk::ExceptionObject & excp)
  {
    std::cerr << "EXPECTED Error while reading the transforms" << std::endl;
    std::cerr << excp << std::endl;
    std::cout << "[SUCCESS]" << std::endl;
    return EXIT_SUCCESS;
  }
  return EXIT_FAILURE;
}


int
itkIOTransformMatlabTest(int argc, char * argv[])
{
  if (argc > 1)
  {
    itksys::SystemTools::ChangeDirectory(argv[1]);
  }

  int result1 = oneTest<float>("Transforms_float.mat", "TransformsBad_float.mat");
  int result2 = secondTest<float>();

  int result3 = oneTest<double>("Transforms_double.mat", "TransformsBad_double.mat");
  int result4 = secondTest<double>();

  int result5 = thirdTest<double>();

  return ((!(result1 == EXIT_SUCCESS && result2 == EXIT_SUCCESS)) &&
          (!(result3 == EXIT_SUCCESS && result4 == EXIT_SUCCESS)) && (!(result5 == EXIT_SUCCESS)));
}