/*============================================================================ MetaIO Copyright 2000-2010 Insight Software Consortium Distributed under the OSI-approved BSD License (the "License"); see accompanying file Copyright.txt for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the License for more information. ============================================================================*/ #ifdef _MSC_VER # pragma warning(disable : 4702) # pragma warning(disable : 4284) #endif #include "metaBlob.h" #if (METAIO_USE_NAMESPACE) namespace METAIO_NAMESPACE { #endif BlobPnt::BlobPnt(int dim) { m_Dim = static_cast(dim); m_X = new float[m_Dim]; for (unsigned int i = 0; i < m_Dim; i++) { m_X[i] = 0; } // Color is red by default m_Color[0] = 1.0f; m_Color[1] = 0.0f; m_Color[2] = 0.0f; m_Color[3] = 1.0f; } BlobPnt::~BlobPnt() { delete[] m_X; } // // MedImage Constructors // MetaBlob::MetaBlob() : MetaObject() { META_DEBUG_PRINT( "MetaBlob()" ); m_NPoints = 0; MetaBlob::Clear(); } // MetaBlob::MetaBlob(const char * _headerName) : MetaObject() { META_DEBUG_PRINT( "MetaBlob()" ); m_NPoints = 0; MetaBlob::Clear(); MetaBlob::Read(_headerName); } // MetaBlob::MetaBlob(const MetaBlob * _blob) : MetaObject() { META_DEBUG_PRINT( "MetaBlob()" ); m_NPoints = 0; MetaBlob::Clear(); MetaBlob::CopyInfo(_blob); } // MetaBlob::MetaBlob(unsigned int dim) : MetaObject(dim) { META_DEBUG_PRINT( "MetaBlob()" ); m_NPoints = 0; MetaBlob::Clear(); } // MetaBlob::~MetaBlob() { MetaBlob::Clear(); MetaObject::M_Destroy(); } // void MetaBlob::PrintInfo() const { MetaObject::PrintInfo(); std::cout << "PointDim = " << m_PointDim << std::endl; std::cout << "NPoints = " << m_NPoints << std::endl; char str[255]; MET_TypeToString(m_ElementType, str); std::cout << "ElementType = " << str << std::endl; } void MetaBlob::CopyInfo(const MetaObject * _object) { MetaObject::CopyInfo(_object); } void MetaBlob::PointDim(const char * pointDim) { strcpy(m_PointDim, pointDim); } const char * MetaBlob::PointDim() const { return m_PointDim; } void MetaBlob::NPoints(size_t npnt) { m_NPoints = npnt; } size_t MetaBlob::NPoints() const { return m_NPoints; } /** Clear blob information */ void MetaBlob::Clear() { META_DEBUG_PRINT( "MetaBlob: Clear" ); MetaObject::Clear(); strcpy(m_ObjectTypeName, "Blob"); META_DEBUG_PRINT( "MetaBlob: Clear: m_NPoints" ); // Delete the list of pointers to blobs. auto it = m_PointList.begin(); while (it != m_PointList.end()) { BlobPnt * pnt = *it; ++it; delete pnt; } m_PointList.clear(); m_NPoints = 0; strcpy(m_PointDim, "x y z red green blue alpha"); m_ElementType = MET_FLOAT; } /** Set Read fields */ void MetaBlob::M_SetupReadFields() { META_DEBUG_PRINT( "MetaBlob: M_SetupReadFields" ); MetaObject::M_SetupReadFields(); MET_FieldRecordType * mF; mF = new MET_FieldRecordType; MET_InitReadField(mF, "PointDim", MET_STRING, true); m_Fields.push_back(mF); mF = new MET_FieldRecordType; MET_InitReadField(mF, "NPoints", MET_INT, true); m_Fields.push_back(mF); mF = new MET_FieldRecordType; MET_InitReadField(mF, "ElementType", MET_STRING, true); mF->required = true; m_Fields.push_back(mF); mF = new MET_FieldRecordType; MET_InitReadField(mF, "Points", MET_NONE, true); mF->terminateRead = true; m_Fields.push_back(mF); } MET_ValueEnumType MetaBlob::ElementType() const { return m_ElementType; } void MetaBlob::ElementType(MET_ValueEnumType _elementType) { m_ElementType = _elementType; } void MetaBlob::M_SetupWriteFields() { MetaObject::M_SetupWriteFields(); MET_FieldRecordType * mF; char s[255]; mF = new MET_FieldRecordType; MET_TypeToString(m_ElementType, s); MET_InitWriteField(mF, "ElementType", MET_STRING, strlen(s), s); m_Fields.push_back(mF); if (strlen(m_PointDim) > 0) { mF = new MET_FieldRecordType; MET_InitWriteField(mF, "PointDim", MET_STRING, strlen(m_PointDim), m_PointDim); m_Fields.push_back(mF); } m_NPoints = static_cast(m_PointList.size()); mF = new MET_FieldRecordType; MET_InitWriteField(mF, "NPoints", MET_INT, static_cast(m_NPoints)); m_Fields.push_back(mF); mF = new MET_FieldRecordType; MET_InitWriteField(mF, "Points", MET_NONE); m_Fields.push_back(mF); } bool MetaBlob::M_Read() { META_DEBUG_PRINT( "MetaBlob: M_Read: Loading Header" ); if (!MetaObject::M_Read()) { std::cout << "MetaBlob: M_Read: Error parsing file" << std::endl; return false; } META_DEBUG_PRINT( "MetaBlob: M_Read: Parsing Header" ); MET_FieldRecordType * mF; mF = MET_GetFieldRecord("NPoints", &m_Fields); if (mF->defined) { m_NPoints = static_cast(mF->value[0]); } mF = MET_GetFieldRecord("ElementType", &m_Fields); if (mF->defined) { MET_StringToType(reinterpret_cast(mF->value), &m_ElementType); } mF = MET_GetFieldRecord("PointDim", &m_Fields); if (mF->defined) { strcpy(m_PointDim, reinterpret_cast(mF->value)); } int * posDim = new int[m_NDims]; int i; for (i = 0; i < m_NDims; i++) { posDim[i] = -1; } int pntDim; char ** pntVal = nullptr; MET_StringToWordArray(m_PointDim, &pntDim, &pntVal); for (int j = 0; j < pntDim; j++) { if (!strcmp(pntVal[j], "x") || !strcmp(pntVal[j], "X")) { posDim[0] = j; } if (!strcmp(pntVal[j], "y") || !strcmp(pntVal[j], "Y")) { posDim[1] = j; } if (!strcmp(pntVal[j], "z") || !strcmp(pntVal[j], "Z")) { posDim[2] = j; } } for (i = 0; i < pntDim; i++) { delete[] pntVal[i]; } delete[] pntVal; float v[16]; if (m_BinaryData) { int elementSize; MET_SizeOfType(m_ElementType, &elementSize); size_t readSize = m_NPoints * (m_NDims + 4) * elementSize; char * _data = new char[readSize]; m_ReadStream->read(_data, readSize); auto gc = static_cast(m_ReadStream->gcount()); if (gc != readSize) { std::cout << "MetaBlob: m_Read: data not read completely" << std::endl; std::cout << " ideal = " << readSize << " : actual = " << gc << std::endl; delete[] _data; delete[] posDim; return false; } i = 0; int d; unsigned int k; for (size_t j = 0; j < m_NPoints; j++) { auto * pnt = new BlobPnt(m_NDims); for (d = 0; d < m_NDims; d++) { auto * num = new float[1]; char * numAlias = reinterpret_cast(num); for (k = 0; k < sizeof(float); k++) { numAlias[k] = _data[i + k]; } float td = num[0]; MET_SwapByteIfSystemMSB(&td, MET_FLOAT); i += sizeof(float); pnt->m_X[d] = td; delete[] num; } for (d = 0; d < 4; d++) { auto * num = new float[1]; char * numAlias = reinterpret_cast(num); for (k = 0; k < sizeof(float); k++) { numAlias[k] = _data[i + k]; } float td = num[0]; MET_SwapByteIfSystemMSB(&td, MET_FLOAT); i += sizeof(float); pnt->m_Color[d] = td; delete[] num; } m_PointList.push_back(pnt); } delete[] _data; } else { for (size_t j = 0; j < m_NPoints; j++) { auto * pnt = new BlobPnt(m_NDims); for (int k = 0; k < pntDim; k++) { *m_ReadStream >> v[k]; m_ReadStream->get(); } int d; for (d = 0; d < m_NDims; d++) { pnt->m_X[d] = v[posDim[d]]; } for (d = 0; d < 4; d++) { pnt->m_Color[d] = v[d + m_NDims]; } m_PointList.push_back(pnt); } if (m_NPoints > 0) { char c = ' '; while ((c != '\n') && (!m_ReadStream->eof())) { c = static_cast(m_ReadStream->get()); // to avoid unrecognized characters } } } delete[] posDim; return true; } bool MetaBlob::M_Write() { if (!MetaObject::M_Write()) { std::cout << "MetaBlob: M_Read: Error parsing file" << std::endl; return false; } /** Then copy all points */ if (m_BinaryData) { PointListType::const_iterator it = m_PointList.begin(); PointListType::const_iterator itEnd = m_PointList.end(); int elementSize; MET_SizeOfType(m_ElementType, &elementSize); char * data = new char[(m_NDims + 4) * m_NPoints * elementSize]; int i = 0; int d; while (it != itEnd) { for (d = 0; d < m_NDims; d++) { float pntX = (*it)->m_X[d]; MET_SwapByteIfSystemMSB(&pntX, MET_FLOAT); MET_DoubleToValue(static_cast(pntX), m_ElementType, data, i++); } for (d = 0; d < 4; d++) { float c = (*it)->m_Color[d]; MET_SwapByteIfSystemMSB(&c, MET_FLOAT); MET_DoubleToValue(static_cast(c), m_ElementType, data, i++); } ++it; } m_WriteStream->write(data, (m_NDims + 4) * m_NPoints * elementSize); m_WriteStream->write("\n", 1); delete[] data; } else { PointListType::const_iterator it = m_PointList.begin(); PointListType::const_iterator itEnd = m_PointList.end(); int d; while (it != itEnd) { for (d = 0; d < m_NDims; d++) { *m_WriteStream << (*it)->m_X[d] << " "; } for (d = 0; d < 4; d++) { *m_WriteStream << (*it)->m_Color[d] << " "; } *m_WriteStream << std::endl; ++it; } } return true; } #if (METAIO_USE_NAMESPACE) }; #endif