/*========================================================================= * * Copyright NumFOCUS * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * https://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ #ifndef itkGridImageSource_hxx #define itkGridImageSource_hxx #include "itkGaussianKernelFunction.h" #include "itkImageLinearIteratorWithIndex.h" #include "itkImageRegionIteratorWithIndex.h" #include "itkTotalProgressReporter.h" #include // For min. namespace itk { template GridImageSource::GridImageSource() { this->m_Sigma.Fill(0.5); this->m_GridSpacing.Fill(4.0); this->m_GridOffset.Fill(0.0); this->m_WhichDimensions.Fill(true); this->m_KernelFunction = dynamic_cast(GaussianKernelFunction::New().GetPointer()); this->DynamicMultiThreadingOn(); this->ThreaderUpdateProgressOff(); } template void GridImageSource::BeforeThreadedGenerateData() { ImageType * output = this->GetOutput(0); this->m_PixelArrays = PixelArrayContainerType::New(); m_PixelArrays->Initialize(); for (unsigned int i = 0; i < ImageDimension; ++i) { this->m_GridOffset[i] = std::min(this->m_GridOffset[i], this->m_GridSpacing[i]); PixelArrayType pixels = m_PixelArrays->CreateElementAt(i); pixels.set_size(this->GetSize()[i]); pixels.fill(1); if (this->m_WhichDimensions[i]) { ImageLinearIteratorWithIndex It(output, output->GetRequestedRegion()); It.SetDirection(i); // Add two extra functions in the front and one in the back to ensure // coverage. unsigned int numberOfGaussians = Math::Ceil(this->GetSize()[i] * output->GetSpacing()[i] / this->m_GridSpacing[i]) + 4u; for (It.GoToBegin(); !It.IsAtEndOfLine(); ++It) { typename ImageType::IndexType index = It.GetIndex(); typename ImageType::PointType point; output->TransformIndexToPhysicalPoint(index, point); RealType val = 0; for (unsigned int j = 0; j < numberOfGaussians; ++j) { RealType num = point[i] - static_cast(j - 2) * this->m_GridSpacing[i] - output->GetOrigin()[i] - this->m_GridOffset[i]; val += this->m_KernelFunction->Evaluate(num / this->m_Sigma[i]); } pixels[index[i]] = val; } pixels = 1.0 - pixels / pixels.max_value(); } this->m_PixelArrays->SetElement(i, pixels); } } template void GridImageSource::DynamicThreadedGenerateData(const ImageRegionType & outputRegionForThread) { ImageType * output = this->GetOutput(0); TotalProgressReporter progress(this, output->GetRequestedRegion().GetNumberOfPixels()); for (ImageRegionIteratorWithIndex It(output, outputRegionForThread); !It.IsAtEnd(); ++It) { RealType val = 1.0; typename ImageType::IndexType index = It.GetIndex(); for (unsigned int i = 0; i < ImageDimension; ++i) { val *= this->m_PixelArrays->GetElement(i)[index[i]]; } It.Set(static_cast(m_Scale * val)); progress.CompletedPixel(); } } template void GridImageSource::PrintSelf(std::ostream & os, Indent indent) const { Superclass::PrintSelf(os, indent); os << indent << "Output image information: " << std::endl; os << indent << " Scale : " << this->GetScale() << std::endl; os << indent << "Grid information: " << std::endl; os << indent << " WhichDimensions : " << this->GetWhichDimensions() << std::endl; os << indent << " Kernel : " << this->GetKernelFunction() << std::endl; os << indent << " Sigma : " << this->GetSigma() << std::endl; os << indent << " Grid spacing : " << this->GetGridSpacing() << std::endl; os << indent << " Grid offset : " << this->GetGridOffset() << std::endl; os << indent << "Pixel arrays: " << m_PixelArrays << std::endl; } } // end namespace itk #endif