/*========================================================================= * * Copyright NumFOCUS * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * https://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ #ifndef itkIOTestHelper_h #define itkIOTestHelper_h #include "ITKIOImageBaseExport.h" #include #include "itksys/SystemTools.hxx" #include "itkImageFileWriter.h" #include "itkImageFileReader.h" #include "vnl/vnl_random.h" namespace itk { class IOTestHelper { public: template static typename TImage::Pointer ReadImage(const std::string & fileName, const bool zeroOrigin = false, typename ImageIOBase::Pointer imageio = nullptr) { using ReaderType = itk::ImageFileReader; auto reader = ReaderType::New(); { if (imageio) { reader->SetImageIO(imageio); } reader->SetFileName(fileName.c_str()); try { reader->Update(); } catch (const itk::ExceptionObject & err) { std::cout << "Caught an exception: " << std::endl; std::cout << err << ' ' << __FILE__ << ' ' << __LINE__ << std::endl; throw; } catch (...) { std::cout << "Error while reading in image for patient " << fileName << std::endl; throw; } } typename TImage::Pointer image = reader->GetOutput(); if (zeroOrigin) { double origin[TImage::ImageDimension]; for (unsigned int i = 0; i < TImage::ImageDimension; ++i) { origin[i] = 0; } image->SetOrigin(origin); } return image; } template static void WriteImage(typename ImageType::Pointer image, const std::string & filename, typename ImageIOType::Pointer imageio = nullptr) { const bool create_local_io_object{ imageio.IsNull() }; using WriterType = itk::ImageFileWriter; { // Test valid filename writing if (create_local_io_object) { imageio = ImageIOType::New(); } auto writer = WriterType::New(); writer->SetImageIO(imageio); writer->SetFileName(filename); writer->SetInput(image); try { writer->Update(); } catch (const itk::ExceptionObject & err) { std::cerr << "Exception Object caught: " << std::endl << err << std::endl; throw; } } { // Test if writing to an invalid location causes exception to be thrown: imageio = imageio->Clone(); // A new io object is needed because the HDF5 io object is single use. A new IO // object is needed to re-initialize the internal state. const std::string bad_root_path{ "/a_blatantly_obvious/bad_file_path/that/should/never/exist/on/the/computer/" }; const std::string bad_filename{ bad_root_path + filename }; bool exception_correctly_caught = false; auto writer = WriterType::New(); writer->SetImageIO(imageio); writer->SetFileName(bad_filename); writer->SetInput(image); try { writer->Update(); } catch (const itk::ExceptionObject & /* err */) { // This is the correct behavior std::cout << "Correctly caught exception for attempting to write to an invalid file." << std::endl; exception_correctly_caught = true; } catch (...) { itkGenericExceptionMacro("IO library exception not converted to an itk::ExceptionObject."); } if (!exception_correctly_caught) { itkGenericExceptionMacro("Invalid file writing path did not throw an exception: " << bad_filename << " with " << imageio->GetNameOfClass()); } } } // // generate random pixels of various types static void RandomPix(vnl_random & randgen, itk::RGBPixel & pix) { for (unsigned int i = 0; i < 3; ++i) { pix[i] = randgen.lrand32(itk::NumericTraits::max()); } } template static void RandomPix(vnl_random & randgen, TPixel & pix) { pix = randgen.lrand32(itk::NumericTraits::max()); } static void RandomPix(vnl_random & randgen, long long & pix) { pix = randgen.lrand32(itk::NumericTraits::max()); pix = (pix << 32) | randgen.lrand32(); } static void RandomPix(vnl_random & randgen, unsigned long long & pix) { pix = randgen.lrand32(); pix = (pix << 32) | randgen.lrand32(); } static void RandomPix(vnl_random & randgen, double & pix) { pix = randgen.drand64(itk::NumericTraits::max()); } static void RandomPix(vnl_random & randgen, float & pix) { pix = randgen.drand64(itk::NumericTraits::max()); } static int Remove(const char * fname) { return static_cast(itksys::SystemTools::RemoveFile(fname)); } template static void SetIdentityDirection(typename ImageType::Pointer & im) { typename ImageType::DirectionType dir; dir.SetIdentity(); im->SetDirection(dir); } template static typename ImageType::Pointer AllocateImageFromRegionAndSpacing(const typename ImageType::RegionType & region, const typename ImageType::SpacingType & spacing) { auto rval = ImageType::New(); SetIdentityDirection(rval); rval->SetSpacing(spacing); rval->SetRegions(region); rval->Allocate(); return rval; } template static typename ImageType::Pointer AllocateImageFromRegionAndSpacing(const typename ImageType::RegionType & region, const typename ImageType::SpacingType & spacing, int vecLength) { auto rval = ImageType::New(); rval->SetSpacing(spacing); rval->SetRegions(region); rval->SetVectorLength(vecLength); rval->Allocate(); return rval; } }; } // namespace itk #endif // itkIOTestHelper_h